Mercurial > repos > iuc > colibread_discosnp_rad

diff discosnp_RAD.xml @ 2:9ee3bf979757 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 45e32ab41e7cdc4e3dabe87f074f052667c22574"
author iuc
date Wed, 22 Jan 2020 17:26:07 -0500
parents 86b6b719e47d
children 2af5a5ca9c87
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line diff
--- a/discosnp_RAD.xml	Wed Sep 05 09:01:59 2018 -0400
+++ b/discosnp_RAD.xml	Wed Jan 22 17:26:07 2020 -0500
@@ -60,7 +60,13 @@
           <param name="k" value="31"/>
           <param name="b" value="2"/>
           <output name="fasta" file="discosnpRAD/fasta.fa"/>
-          <output name="vcf" file="discosnpRAD/vcf_file.vcf" compare="diff" lines_diff="2"/>
+          <output name="vcf">
+              <assert_contents>
+                  <has_n_lines n="8"/>
+                  <has_text text="Ty=SNP;Rk=0;UL=23;UR=39;CL=.;CR=.;Genome=.;Sd=."/>
+                  <has_text text="0/1:84:604,15,604:42,42:0,0"/>
+              </assert_contents>
+          </output>
       </test>
   </tests>