Mercurial > repos > iuc > colibread_discosnp_rad
view test-data/discosnp/vcf_file_paired.vcf @ 0:86b6b719e47d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 7e976e65d4630ce8b485efd1d50a168ba98276e6
| author | iuc |
|---|---|
| date | Fri, 24 Nov 2017 12:48:46 -0500 |
| parents | |
| children | 2af5a5ca9c87 |
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##fileformat=VCFv4.1 ##filedate=2017102 ##source=VCF_creator ##SAMPLE=file://discoRes_k_31_c_auto_D_0_P_1_b_0_coherentBWA_MEM.sam ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches"> ##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or ."> ##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or ."> ##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank"> ##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left"> ##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right"> ##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left"> ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right"> ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . "> ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement"> ##INFO=<ID=XA,Number=0/1,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself."> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)"> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods"> ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample"> ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1 read661_contig0_position139_M0_I0_D0_NG0______er0__indel0__rgeom0_rev0 62 3 C G . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=C;Sd=1 GT:DP:PL:AD:HQ 0/1:258:1927,18,1727:124,134:0,0 read780_contig0_position26_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 43 2 A T . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=A;Sd=1 GT:DP:PL:AD:HQ 0/1:160:1260,18,1020:74,86:0,0 read656_contig0_position454_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 62 1 T A . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=T;Sd=1 GT:DP:PL:AD:HQ 0/1:224:1628,17,1548:110,114:0,0