Mercurial > repos > iuc > colibread_discosnp_rad

changeset 5:74ed1718ef58 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 747394d19e88a569a5154615e366ea0401c820dd
author iuc
date Sat, 05 Oct 2024 19:55:43 +0000
parents 923df36f6592
children
files discosnp_RAD.xml macros.xml
diffstat 2 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/discosnp_RAD.xml	Thu May 06 12:43:46 2021 +0000
+++ b/discosnp_RAD.xml	Sat Oct 05 19:55:43 2024 +0000
@@ -1,6 +1,7 @@
-<tool id="discosnp_rad" name="DiscoSnpRAD" version="@DISCOSNP_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="discosnp_rad" name="DiscoSnpRAD" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>discovering polymorphism from raw unassembled RADSeq NGS reads.</description>
     <macros>
+        <token name="@TOOL_VERSION@">2.5.4</token>
         <import>macros.xml</import>
     </macros>
     <expand macro="discosnp_requirements" />
@@ -43,8 +44,8 @@
       <expand macro="discosnp_options" />
   </inputs>
   <outputs>
-      <data name="vcf" from_work_dir="discoRad_*_clustered.vcf" format="vcf" label="VCF with ${tool.name} on $on_string"/>
-      <data name="fasta" from_work_dir="discoRad_*_raw.fa" format="fasta" label="Fasta with ${tool.name} on $on_string"/>
+      <data name="vcf" from_work_dir="discoRad_*_clustered.vcf" format="vcf" label="${tool.name} on ${on_string}: VCF"/>
+      <data name="fasta" from_work_dir="discoRad_*_raw.fa" format="fasta" label="${tool.name} on ${on_string}: FASTA"/>
   </outputs>
   <tests>
       <test>
@@ -55,7 +56,6 @@
           <param name="D" value="0"/>
           <param name="P" value="4"/>
           <param name="k" value="31"/>
-          <param name="b" value="2"/>
           <param name="max_size_cluster" value="50"/>
           <param name="max_missing" value="0.95"/>
           <param name="min_rank" value="0.0"/>
--- a/macros.xml	Thu May 06 12:43:46 2021 +0000
+++ b/macros.xml	Sat Oct 05 19:55:43 2024 +0000
@@ -1,11 +1,10 @@
 <macros>
-    <token name="@DISCOSNP_VERSION@">2.5.4</token>
 
-    <token name="@PROFILE@">20.01</token>
+    <token name="@PROFILE@">23.1</token>
 
     <xml name="discosnp_requirements">
         <requirements>
-            <requirement type="package" version="@DISCOSNP_VERSION@">discosnp</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">discosnp</requirement>
         </requirements>
     </xml>