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view test-data/discosnp/vcf_file.vcf @ 6:7c02beb8ba3d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 747394d19e88a569a5154615e366ea0401c820dd
author iuc
date Sat, 05 Oct 2024 19:54:14 +0000
parents ccc77612cbb9
children
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##fileformat=VCFv4.1
##filedate=2020814XX
##source=VCF_creator
##SAMPLE=file://discoRes_k_25_c_auto_D_0_P_1_b_0_coherent.fa
##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches">
##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or .">
##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or .">
##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank">
##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left">
##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right">
##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left">
##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right">
##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . ">
##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement">
##INFO=<ID=XA,Number=.,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods">
##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample">
##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	G1	G2
SNP_higher_path_3	116	3	A	T	.	.	Ty=SNP;Rk=1;UL=92;UR=55;CL=.;CR=.;Genome=.;Sd=.	GT:DP:PL:AD:HQ	0/0:74:8,227,1484:74,0:0,0	1/1:86:1724,263,8:0,86:0,0
SNP_higher_path_2	291	2	C	G	.	.	Ty=SNP;Rk=1;UL=267;UR=92;CL=.;CR=.;Genome=.;Sd=.	GT:DP:PL:AD:HQ	1/1:124:2484,378,10:0,124:0,0	0/0:134:10,408,2684:134,0:0,0
SNP_higher_path_1	499	1	A	T	.	.	Ty=SNP;Rk=1;UL=475;UR=267;CL=.;CR=.;Genome=.;Sd=.	GT:DP:PL:AD:HQ	1/1:110:2204,335,9:0,110:0,0	0/0:114:9,347,2284:114,0:0,0