diff test-data/discosnp/vcf_file.vcf @ 0:dd5398cf0eeb draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
author iuc
date Fri, 20 Oct 2017 03:13:51 -0400
parents
children 13c8e1ce0a15
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/discosnp/vcf_file.vcf	Fri Oct 20 03:13:51 2017 -0400
@@ -0,0 +1,23 @@
+##fileformat=VCFv4.1
+##filedate=2017102
+##source=VCF_creator
+##SAMPLE=file://discoRes_k_25_c_auto_D_0_P_1_b_0_coherent.fa
+##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches">
+##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or .">
+##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or .">
+##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank">
+##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left">
+##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right">
+##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left">
+##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right">
+##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . ">
+##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods">
+##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample">
+##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	G1	G2
+SNP_higher_path_3	24	3	A	T	.	.	Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=.	GT:DP:PL:AD:HQ	0/0:74:8,227,1484:74,0:0,0	1/1:86:1724,263,8:0,86:0,0
+SNP_higher_path_2	24	2	C	G	.	.	Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=.	GT:DP:PL:AD:HQ	1/1:124:2484,378,10:0,124:0,0	0/0:134:10,408,2684:134,0:0,0
+SNP_higher_path_1	24	1	A	T	.	.	Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=.	GT:DP:PL:AD:HQ	1/1:110:2204,335,9:0,110:0,0	0/0:114:9,347,2284:114,0:0,0