Mercurial > repos > iuc > colibread_mapsembler2
comparison test-data/discosnpRAD/fasta.fa @ 4:e7c5b81b3c22 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 0ed02865f048ad7471ea79509c0e23162bc29166"
| author | iuc |
|---|---|
| date | Mon, 17 Aug 2020 10:40:05 -0400 |
| parents | 00fd0b4274fd |
| children |
comparison
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| 3:455fad9f2adb | 4:e7c5b81b3c22 |
|---|---|
| 1 >SNP_higher_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 | 1 >SNP_higher_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|left_contig_length_40|right_contig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 |
| 2 gATTGGATGCGAGCTTCTTTACCCGATCATACGTCCAGCGAAGGGATTAGCTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt | 2 gggagcgtccgataattagtgtcctacttagtcaatagggATTGGATGCGAGCTTCTTTACCCGATCATACGTCCAGCGAAGGGATTAGCTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt |
| 3 >SNP_lower_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 | 3 >SNP_lower_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|left_contig_length_40|right_contig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 |
| 4 gATTGGATGCGAGCTTCTTTACCCGATCATATGTCCAGCGAAGGGATTAGGTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt | 4 gggagcgtccgataattagtgtcctacttagtcaatagggATTGGATGCGAGCTTCTTTACCCGATCATATGTCCAGCGAAGGGATTAGGTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt |
| 5 >SNP_higher_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 | 5 >SNP_higher_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|left_contig_length_67|right_contig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 |
| 6 tATGATCGGGTAAAGAAGCTCGCATCCAATCCCTATTGACTAAGTAGGACACTAATTATCGGacgctccc | 6 actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtATGATCGGGTAAAGAAGCTCGCATCCAATCCCTATTGACTAAGTAGGACACTAATTATCGGacgctccc |
| 7 >SNP_lower_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 | 7 >SNP_lower_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|left_contig_length_67|right_contig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 |
| 8 tATGATCGGGTAAAGAAGCTCGCATCCAATCGCTATTGACTAAGTAGGACACTAATTATCGGacgctccc | 8 actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtATGATCGGGTAAAGAAGCTCGCATCCAATCGCTATTGACTAAGTAGGACACTAATTATCGGacgctccc |
| 9 >SNP_higher_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 | 9 >SNP_higher_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|left_contig_length_5|right_contig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 |
| 10 ctatcGCGGCTGTTCGTATGATGACCTATGCGGAGAGGGGAAACCAGATGGGTGACCCAAAAACGCacgcgacctctgtaatagggctccaggtgggaattaggcgtggtccgtcag | 10 ctatcGCGGCTGTTCGTATGATGACCTATGCGGAGAGGGGAAACCAGATGGGTGACCCAAAAACGCacgcgacctctgtaatagggctccaggtgggaattaggcgtggtccgtcag |
| 11 >SNP_lower_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 | 11 >SNP_lower_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|left_contig_length_5|right_contig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 |
| 12 ctatcGCGGCTGTTCGTATGATGACCTATGCGGAGCGGGGAAACCAGATGGGTGACCCAAAAACGCacgcgacctctgtaatagggctccaggtgggaattaggcgtggtccgtcag | 12 ctatcGCGGCTGTTCGTATGATGACCTATGCGGAGCGGGGAAACCAGATGGGTGACCCAAAAACGCacgcgacctctgtaatagggctccaggtgggaattaggcgtggtccgtcag |
| 13 >SNP_higher_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 | 13 >SNP_higher_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|left_contig_length_87|right_contig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 |
| 14 ggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGAAATATAGGAGACGAAAACATAGCTCTTCTT | 14 ctatcgcggctgttcgtatgatgacctatgcggagcggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGAAATATAGGAGACGAAAACATAGCTCTTCTT |
| 15 >SNP_lower_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 | 15 >SNP_lower_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|left_contig_length_87|right_contig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0 |
| 16 ggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGGAATATAGGAGACGAAAACATAGCTCTTCTT | 16 ctatcgcggctgttcgtatgatgacctatgcggagcggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGGAATATAGGAGACGAAAACATAGCTCTTCTT |
| 17 >SNP_higher_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 | 17 >SNP_higher_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|left_contig_length_93|right_contig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 |
| 18 ccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACAGTATGATACAGGGAGTGAAGGAGGGA | 18 gtcgttgagtcagctcataagccaacgaccagctcactcgccctggacaggagaggcgatcttacaagttccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACAGTATGATACAGGGAGTGAAGGAGGGA |
| 19 >SNP_lower_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 | 19 >SNP_lower_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|left_contig_length_93|right_contig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 |
| 20 ccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACCGTATGATACAGGGAGTGAAGGAGGGA | 20 gtcgttgagtcagctcataagccaacgaccagctcactcgccctggacaggagaggcgatcttacaagttccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACCGTATGATACAGGGAGTGAAGGAGGGA |
| 21 >SNP_higher_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 | 21 >SNP_higher_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|left_contig_length_106|right_contig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 |
| 22 ctattgacTAAGTAGGACACTAATTATCGGACGCTCCCCGGGGGAGGTCAAC | 22 actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtatgatcgggtaaagaagctcgcatccaatcgctattgacTAAGTAGGACACTAATTATCGGACGCTCCCCGGGGGAGGTCAAC |
| 23 >SNP_lower_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 | 23 >SNP_lower_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|left_contig_length_106|right_contig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0 |
| 24 ctattgacTAAGTAGGACACTAATTATCGGACGCTCCCTGGGGGAGGTCAAC | 24 actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtatgatcgggtaaagaagctcgcatccaatcgctattgacTAAGTAGGACACTAATTATCGGACGCTCCCTGGGGGAGGTCAAC |
| 25 >SNP_higher_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 | 25 >SNP_higher_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|left_contig_length_23|right_contig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 |
| 26 gtgccgctcctcaggggttattgAAAACTAGACCGTCTAGCCAATATAAAGGGAACTTGTAAGATCGCCTCTCCTGTCCAGGGCgagtgagctggtcgttggcttatgagctgactcaacgac | 26 gtgccgctcctcaggggttattgAAAACTAGACCGTCTAGCCAATATAAAGGGAACTTGTAAGATCGCCTCTCCTGTCCAGGGCgagtgagctggtcgttggcttatgagctgactcaacgac |
| 27 >SNP_lower_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 | 27 >SNP_lower_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|left_contig_length_23|right_contig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0 |
| 28 gtgccgctcctcaggggttattgAAAACTAGACCGTCTAGCCAATATAAAGGGTACTTGTAAGATCGCCTCTCCTGTCCAGGGCgagtgagctggtcgttggcttatgagctgactcaacgac | 28 gtgccgctcctcaggggttattgAAAACTAGACCGTCTAGCCAATATAAAGGGTACTTGTAAGATCGCCTCTCCTGTCCAGGGCgagtgagctggtcgttggcttatgagctgactcaacgac |