Mercurial > repos > iuc > colibread_mapsembler2

diff macros.xml @ 4:e7c5b81b3c22 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 0ed02865f048ad7471ea79509c0e23162bc29166"
author iuc
date Mon, 17 Aug 2020 10:40:05 -0400
parents 00fd0b4274fd
children c5371f68db91
line wrap: on
line diff
--- a/macros.xml	Wed Jan 22 17:30:00 2020 -0500
+++ b/macros.xml	Mon Aug 17 10:40:05 2020 -0400
@@ -1,12 +1,12 @@
 <macros>
+    <token name="@DISCOSNP_VERSION@">2.5.4</token>
+
     <xml name="discosnp_requirements">
         <requirements>
-            <requirement type="package" version="2.3.0">discosnp</requirement>
+            <requirement type="package" version="@DISCOSNP_VERSION@">discosnp</requirement>
         </requirements>
     </xml>
 
-    <token name="@DISCOSNP_VERSION@">2.3.0</token>
-
     <token name="@discosnp_single_reads@"><![CDATA[
         #for $input in $input_type_options.list_reads
             #set $filename = os.path.basename(str($input)) + "." + $input.ext
@@ -64,7 +64,7 @@
             </param>
             <when value="auto" />
             <when value="custom">
-                <param argument="-c" type="text" label="Minimal coverage per read set" value="4" help="e.g. 4 / 4,5,17 / 4,auto,auto"/>
+                <param argument="-c" type="text" label="Minimal coverage per read set" value="3" help="e.g. 3 / 3,5,17 / 3,auto,auto"/>
             </when>
         </conditional>
 
@@ -75,7 +75,6 @@
 
     <token name="@discosnp_inputs@"><![CDATA[
         -r input.lst
-        -b ${b}
         -D ${D}
         -P ${P}
         ${low_complexity}