diff test-data/discosnp/vcf_file_paired.vcf @ 0:e1fdaacdabc3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
author iuc
date Fri, 20 Oct 2017 03:16:32 -0400
parents
children a018b8f663ea
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/discosnp/vcf_file_paired.vcf	Fri Oct 20 03:16:32 2017 -0400
@@ -0,0 +1,23 @@
+##fileformat=VCFv4.1
+##filedate=2017102
+##source=VCF_creator
+##SAMPLE=file://discoRes_k_31_c_auto_D_0_P_1_b_0_coherentBWA_MEM.sam
+##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches">
+##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or .">
+##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or .">
+##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank">
+##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left">
+##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right">
+##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left">
+##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right">
+##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . ">
+##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods">
+##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample">
+##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	G1
+read661_contig0_position139_M0_I0_D0_NG0______er0__indel0__rgeom0_rev0	62	3	C	G	.	MULTIPLE	Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=C;Sd=1	GT:DP:PL:AD:HQ	0/1:258:1927,18,1727:124,134:0,0
+read780_contig0_position26_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1	43	2	A	T	.	MULTIPLE	Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=A;Sd=1	GT:DP:PL:AD:HQ	0/1:160:1260,18,1020:74,86:0,0
+read656_contig0_position454_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1	62	1	T	A	.	MULTIPLE	Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=T;Sd=1	GT:DP:PL:AD:HQ	0/1:224:1628,17,1548:110,114:0,0