Mercurial > repos > iuc > collection_element_identifiers

annotate collection_element_identifiers.xml @ 0:220ee3518f19 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
author iuc
date Fri, 15 Jun 2018 04:55:24 -0400
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children d3c07d270a50
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220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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1 <tool id="collection_element_identifiers" name="Extract element identifiers" version="0.0.1">
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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2 <description>of a list collection</description>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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3 <requirements>
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iuc
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4 </requirements>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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5 <command detect_errors="exit_code"><![CDATA[
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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6 mv '$cf' '$output'
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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7 ]]>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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8 </command>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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9 <configfiles>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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10 <configfile name="cf">#for $el in $input_collection:
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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11 ${el.element_identifier}
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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12 #end for</configfile>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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13 </configfiles>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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14 <inputs>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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15 <param name="input_collection" type="data_collection" collection_type="list" label="Dataset collection"/>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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16 </inputs>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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17 <outputs>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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18 <data name="output" format="txt" />
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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19 </outputs>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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20 <tests>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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21 <test>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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22 <param name="input_collection">
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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23 <collection type="list">
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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24 <element name="e1" value="simple_line.txt" />
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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25 <element name="e2" value="simple_line.txt" />
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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26 <element name="e3" value="simple_line.txt" />
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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27 </collection>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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28 </param>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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29 <output name="output" file="output.txt" />
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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30 </test>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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31 </tests>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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32 <help><![CDATA[
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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33 This tool takes a list-type collection and produces a text dataset as output, containing the element identifiers of all datasets contained in the collection.
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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34 ]]></help>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
iuc
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35 <citations>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
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36 </citations>
220ee3518f19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
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37 </tool>