Mercurial > repos > iuc > collection_element_identifiers

comparison collection_element_identifiers.xml @ 1:d3c07d270a50 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 499e43875e82f64ed046fb85ee6f8ae7e5f3673f
author iuc
date Mon, 01 Apr 2019 12:06:57 -0400
parents 220ee3518f19
children
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0:220ee3518f19 1:d3c07d270a50
1 <tool id="collection_element_identifiers" name="Extract element identifiers" version="0.0.1"> 1 <tool id="collection_element_identifiers" name="Extract element identifiers" version="0.0.2">
2 <description>of a list collection</description> 2 <description>of a list collection</description>
3 <requirements> 3 <requirements>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 mv '$cf' '$output' 6 mv '$cf' '$output'
10 <configfile name="cf">#for $el in $input_collection: 10 <configfile name="cf">#for $el in $input_collection:
11 ${el.element_identifier} 11 ${el.element_identifier}
12 #end for</configfile> 12 #end for</configfile>
13 </configfiles> 13 </configfiles>
14 <inputs> 14 <inputs>
15 <param name="input_collection" type="data_collection" collection_type="list" label="Dataset collection"/> 15 <param name="input_collection" type="data_collection" collection_type="list,list:paired" label="Dataset collection"/>
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data name="output" format="txt" /> 18 <data name="output" format="txt" />
19 </outputs> 19 </outputs>
20 <tests> 20 <tests>
24 <element name="e1" value="simple_line.txt" /> 24 <element name="e1" value="simple_line.txt" />
25 <element name="e2" value="simple_line.txt" /> 25 <element name="e2" value="simple_line.txt" />
26 <element name="e3" value="simple_line.txt" /> 26 <element name="e3" value="simple_line.txt" />
27 </collection> 27 </collection>
28 </param> 28 </param>
29 <output name="output" file="output.txt" /> 29 <output name="output" file="output_1.txt" />
30 </test>
31 <test>
32 <param name="input_collection">
33 <collection type="list:paired">
34 <element name="pair1">
35 <collection type="paired">
36 <element name="forward" value="simple_line.txt" />
37 <element name="reverse" value="simple_line.txt" />
38 </collection>
39 </element>
40 <element name="pair2">
41 <collection type="paired">
42 <element name="forward" value="simple_line.txt" />
43 <element name="reverse" value="simple_line.txt" />
44 </collection>
45 </element>
46 </collection>
47 </param>
48 <output name="output" file="output_2.txt"/>
30 </test> 49 </test>
31 </tests> 50 </tests>
32 <help><![CDATA[ 51 <help><![CDATA[
33 This tool takes a list-type collection and produces a text dataset as output, containing the element identifiers of all datasets contained in the collection. 52 This tool takes a list-type collection and produces a text dataset as output, containing the element identifiers of all datasets contained in the collection.
34 ]]></help> 53 ]]></help>