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comparison concoct.xml @ 7:eae7ee167917 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 86e1afebec29c10ef1e31196b23c24fde2d086da
author iuc
date Sun, 12 Nov 2023 14:30:52 +0000
parents 16672a3c9b65
children
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6:16672a3c9b65 7:eae7ee167917
1 <tool id="concoct" name="CONCOCT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="concoct" name="CONCOCT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>for metagenome binning</description> 2 <description>for metagenome binning</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="biotools"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 ## CONCOCT doesn't handle gzipped files. 9 ## CONCOCT doesn't handle gzipped files.
9 #if $composition_file.ext.endswith(".gz") 10 #if $composition_file.ext.endswith(".gz")
10 gunzip -c '$composition_file' > 'composition_file.fa' && 11 gunzip -c '$composition_file' > 'composition_file.fa' &&