--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/coverage_table.xml	Sun Mar 13 08:45:32 2022 +0000
@@ -0,0 +1,40 @@
+<tool id="concoct_coverage_table" name="CONCOCT coverage table" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/coverage_table.py'
+--input_fasta '$input_fasta'
+#if $input_fasta.is_of_type('fasta.gz'):
+    --gzipped
+#end if
+--input_tabular '$input_tabular'
+--output '$output'
+    ]]></command>
+    <inputs>
+        <param name="input_fasta" type="data" format="fasta,fasta.gz" label="Contigs fasta file"/>
+        <param name="input_tabular" type="data" format="tabular" label="Tabular bedtools Genome Coverage histogram file" help="Set the bedtools Genome Coverage Output type to be Data suitable for Histogram"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="input_fasta" value="input_coverage_table.fasta.gz" ftype="fasta.gz"/>
+            <param name="input_tabular" value="input_coverage_table.tabular" ftype="tabular"/>
+            <output name="output" file="output_coverage_table.tabular" ftype="tabular"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+Accepts an assembled (and possibly cut by the Cut fasta contigs tool) fasta contigs file and a tabular coverage histogram
+file (produced by the bedtools Genomve Coverage tool) and outputs a tabular coverage file for use as the input to the
+CONCOCT metagenome binning tool.
+
+@HELP_OVERVIEW@
+    ]]></help>
+    <expand macro="citations"/>
+</tool>