Mercurial > repos > iuc > concoct_extract_fasta_bins

comparison extract_fasta_bins.xml @ 6:8b1b09fcd8b7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 86e1afebec29c10ef1e31196b23c24fde2d086da
author iuc
date Sun, 12 Nov 2023 14:31:16 +0000
parents bcd8d64f82b7
children
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5:c821c34ab9d9 6:8b1b09fcd8b7
1 <tool id="concoct_extract_fasta_bins" name="CONCOCT: Extract a fasta file" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="concoct_extract_fasta_bins" name="CONCOCT: Extract a fasta file" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>for each cluster</description> 2 <description>for each cluster</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="biotools"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 ## CONCOCT doesn't handle gzipped files. 9 ## CONCOCT doesn't handle gzipped files.
9 #if $fasta_file.ext.endswith(".gz") 10 #if $fasta_file.ext.endswith(".gz")
10 gunzip -c '$fasta_file' > 'contigs.fa' && 11 gunzip -c '$fasta_file' > 'contigs.fa' &&