Mercurial > repos > iuc > concoct_merge_cut_up_clustering

annotate merge_cut_up_clustering.xml @ 2:21ccf9548e2c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 1a79c139165648b969d82530784cea3fc8f2d2c0"
author iuc
date Thu, 07 Jul 2022 08:33:59 +0000
parents b546422c9128
children 20ccec4a2c38
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21ccf9548e2c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 1a79c139165648b969d82530784cea3fc8f2d2c0"
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1 <tool id="concoct_merge_cut_up_clustering" name="CONCOCT: Merge cut clusters" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
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2 <description>and assign concensus clusters for the original contigs</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"/>
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7 <command detect_errors="exit_code"><![CDATA[
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8 merge_cutup_clustering.py
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9 '$cutup_clustering_result'
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10 > '$output'
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11 ]]></command>
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12 <inputs>
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13 <param name="cutup_clustering_result" type="data" format="csv" label="Clusters generated by CONCOCT"/>
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14 </inputs>
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15 <outputs>
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16 <data name="output" format="csv"/>
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17 </outputs>
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18 <tests>
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19 <!-- default settings -->
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20 <test expect_num_outputs="1">
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21 <param name="cutup_clustering_result" value="clusters.csv" ftype="csv"/>
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22 <output name="output" ftype="csv">
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23 <assert_contents>
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24 <has_size value="6923"/>
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25 <has_text text="contig-21000001,39"/>
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26 </assert_contents>
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27 </output>
0
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28 </test>
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29 </tests>
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30 <help><![CDATA[
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31 **What it does**
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32
2
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33 This tool merges the clustering created by concoct by looking at cluster assignments per contig part and assigning a concensus cluster for the original contig. The output contains a header line and contig_id and cluster_id per line, separated by a comma.
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34
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35 @HELP_OVERVIEW@
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36 ]]></help>
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37 <expand macro="citations"/>
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38 </tool>