Mercurial > repos > iuc > concoct_merge_cut_up_clustering
comparison merge_cut_up_clustering.xml @ 0:b546422c9128 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 40a09cbfd6052f7b0295946621db1bdf58228b09"
| author | iuc |
|---|---|
| date | Sun, 13 Mar 2022 08:44:34 +0000 |
| parents | |
| children | 21ccf9548e2c |
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| -1:000000000000 | 0:b546422c9128 |
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| 1 <tool id="concoct_merge_cut_up_clustering" name="CONCOCT: merge cut clusters" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> | |
| 2 <description>into the original</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 python '$__tool_directory__/merge_cut_up_clustering.py' | |
| 9 --input '$input' | |
| 10 --output '$output' | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="tabular" label="Tabular file containng cut up contigs"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output" format="tabular"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <!-- default settings --> | |
| 20 <test expect_num_outputs="1"> | |
| 21 <param name="input" value="input_merge_clusters.tabular" ftype="tabular"/> | |
| 22 <output name="output" file="output_merge_clusters.tabular" ftype="tabular"/> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help><![CDATA[ | |
| 26 **What it does** | |
| 27 | |
| 28 Accepts a tbular file containing clusters output by the CONCOCT metagenome binning tool | |
| 29 and produces a tabular file of the original contigs, with consecutive slices merged. | |
| 30 | |
| 31 @HELP_OVERVIEW@ | |
| 32 ]]></help> | |
| 33 <expand macro="citations"/> | |
| 34 </tool> |