Mercurial > repos > iuc > cooc_mutbamscan

annotate test-data/omicron_ba1_mutations.yaml @ 4:f54e0ba38257 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit dbe11701b46195306ce4bbad1935824461e17520
author iuc
date Fri, 14 Jun 2024 21:23:33 +0000
parents 373c1735d31f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
1 variant:
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
2 voc: VOC-21NOV-01
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
3 pheuid: pentagon-refining
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
4 short: om1
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
5 pangolin: BA.1
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
6 source:
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
7 - https://github.com/cov-lineages/pango-designation/issues/343
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
8 threshold: 10
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
9 mut:
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
10 # ORF1ab
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
11 2832: 'A>G' # nsp3:K38R
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
12 5386: 'T>G' # syn nsp3
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
13 8393: 'G>A' # nsp3:A1892T
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
14 11537: 'A>G' # nsp6:I189V
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
15 13195: 'T>C' # syn nsp10
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
16 18163: 'A>G' # nsp14:I42V
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
17 # S
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
18 22679: 'T>C' # surface glycoprotein:S373P
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
19 22898: 'G>A' # surface glycoprotein:G446S
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
20 23048: 'G>A' # surface glycoprotein:G496S
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
21 23202: 'C>A' # surface glycoprotein:T547K
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
22 23599: 'T>G' # surface glycoprotein:N679K
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
23 24130: 'C>A' # surface glycoprotein:N856K
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
24 24469: 'T>A' # surface glycoprotein:N969K
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
25 24503: 'C>T' # surface glycoprotein:L981F
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
26 # M
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
27 26530: 'A>G' # membrane glycoprotein:D3G
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
28 26577: 'C>G' # membrane glycoprotein:Q19E
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
29 # ORF6
373c1735d31f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
30 27259: 'A>C' # syn ORF6 protein