Mercurial > repos > iuc > coverm_contig
diff coverm_contig.xml @ 1:688a777e1b19 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/coverm commit 2388df7187533fb66b7729730340d2eb7b93c112
| author | iuc |
|---|---|
| date | Tue, 24 Jan 2023 12:33:11 +0000 |
| parents | 6941d0d453ba |
| children | f8cb3f0a19fa |
line wrap: on
line diff
--- a/coverm_contig.xml Tue Apr 26 15:27:37 2022 +0000 +++ b/coverm_contig.xml Tue Jan 24 12:33:11 2023 +0000 @@ -1,8 +1,7 @@ -<tool id="coverm_contig" name="CoverM-CONTIG" version="@TOOL_VERSION@" python_template_version="3.5"> +<tool id="coverm_contig" name="CoverM contig" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>Calculate coverage of individual contigs</description> <macros> <import>macros.xml</import> - <token name="@INPUT_FORMATS@">fasta,fastq,fastq.gz,fasta.gz</token> - <token name="@TOOL_VERSION@">0.2.1</token> </macros> <expand macro="requirements"/> <command><![CDATA[ @@ -224,7 +223,7 @@ #if $cov.contig_end_exclusion: --contig-end-exclusion $cov.contig_end_exclusion #end if - #if $cov.cond_methods.trimmed_mean + #if $cov.cond_methods.trimmed_mean == "trimmed_mean" #if $cov.cond_methods.trim_min: --trim-min $cov.cond_methods.trim_min #end if @@ -238,7 +237,6 @@ #end if --output-file output.tsv --threads \${GALAXY_SLOTS:-1} - 2> stdout.txt ]]></command> <inputs> <expand macro="reads_for_contig" />