# HG changeset patch
# User iuc
# Date 1508513582 14400
# Node ID 083774cc8472086a021336c1d789034a57647e46
# Parent  8e5feca6a518be2bea02f15e8062428e1e43531e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 39a5f30a013c6d71ea84807b72511e3aa4bab147

diff -r 8e5feca6a518 -r 083774cc8472 crossmap_bam.xml
--- a/crossmap_bam.xml	Fri Oct 20 02:48:57 2017 -0400
+++ b/crossmap_bam.xml	Fri Oct 20 11:33:02 2017 -0400
@@ -50,7 +50,7 @@
         <test>
             <param name="index_source" value="cached"/>
 
-            <param name="input" value="test_bam_01_input_a.bam" ftype="bam"/>
+            <param name="input" value="test_bam_01_input_a.bam" ftype="bam" dbkey="hg18"/>
             <param name="include_fails" value="False"/>
 
             <output name="output" file="test_bam_01_output_a.bam" compare="diff" lines_diff="8"/>
diff -r 8e5feca6a518 -r 083774cc8472 macros.xml
--- a/macros.xml	Fri Oct 20 02:48:57 2017 -0400
+++ b/macros.xml	Fri Oct 20 11:33:02 2017 -0400
@@ -28,9 +28,7 @@
             <when value="cached">
                 <param name="input_chain" type="select" label="Lift Over To">
                     <options from_data_table="liftOver">
-                        <!--
                         <filter type="data_meta" ref="input" key="dbkey" column="0"/>
-                        -->
                     </options>
                 </param>
             </when>
diff -r 8e5feca6a518 -r 083774cc8472 test-data/cached_locally/liftOver.loc
--- a/test-data/cached_locally/liftOver.loc	Fri Oct 20 02:48:57 2017 -0400
+++ b/test-data/cached_locally/liftOver.loc	Fri Oct 20 11:33:02 2017 -0400
@@ -29,4 +29,4 @@
 #anoCar1	hg18	/depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain
 #...etc...
 
-A	B	${__HERE__}/aToB.over.chain
+hg18	hg19	${__HERE__}/aToB.over.chain