# HG changeset patch
# User iuc
# Date 1752059543 0
# Node ID b1c12a94db6f3db51218590f8a794b70e1fef5e9
# Parent  50b7875a49d0c7ba36b4f6c5605b156317d7f168
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 1b4c5b184b10336bca092cf347019c4368a7771c

diff -r 50b7875a49d0 -r b1c12a94db6f crossmap_bed.xml
--- a/crossmap_bed.xml	Mon Sep 02 12:02:19 2024 +0000
+++ b/crossmap_bed.xml	Wed Jul 09 11:12:23 2025 +0000
@@ -35,7 +35,7 @@
             <option value="l">Long style, e.g. chr1, chrX</option>
             <option value="s">Short style, e.g. 1, X</option>
         </param>
-        <param name="merge_unmapped_entries" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Merge failed and converted entries into single file"/>
+        <param name="merge_unmapped_entries" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Merge failed and converted entries into single file"/>
     </inputs>
     <outputs>
         <data name="output_valid" format="bed" label="${tool.name} (valid only) on ${on_string}" from_work_dir="output">
diff -r 50b7875a49d0 -r b1c12a94db6f macros.xml
--- a/macros.xml	Mon Sep 02 12:02:19 2024 +0000
+++ b/macros.xml	Wed Jul 09 11:12:23 2025 +0000
@@ -5,7 +5,7 @@
             <yield/>
         </requirements>
     </xml>
-    <token name="@TOOL_VERSION@">0.7.0</token>
+    <token name="@TOOL_VERSION@">0.7.3</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="stdio">
         <stdio>
diff -r 50b7875a49d0 -r b1c12a94db6f test-data/test_vcf_01_output.vcf.unmap
--- a/test-data/test_vcf_01_output.vcf.unmap	Mon Sep 02 12:02:19 2024 +0000
+++ b/test-data/test_vcf_01_output.vcf.unmap	Wed Jul 09 11:12:23 2025 +0000
@@ -4,4 +4,3 @@
 ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
 ##contig=<ID=1,length=195471971>
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMP001	SAMP002
-1	200 rs84823 T	G	.	PASS	.	GT:PL	./.:.	1/1:10,5,0	Fail(REF==ALT)