Mercurial > repos > iuc > crossmap_bed
changeset 11:b1c12a94db6f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 1b4c5b184b10336bca092cf347019c4368a7771c
| author | iuc |
|---|---|
| date | Wed, 09 Jul 2025 11:12:23 +0000 (7 days ago) |
| parents | 50b7875a49d0 |
| children | |
| files | crossmap_bed.xml macros.xml test-data/test_vcf_01_output.vcf.unmap |
| diffstat | 3 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/crossmap_bed.xml Mon Sep 02 12:02:19 2024 +0000 +++ b/crossmap_bed.xml Wed Jul 09 11:12:23 2025 +0000 @@ -35,7 +35,7 @@ <option value="l">Long style, e.g. chr1, chrX</option> <option value="s">Short style, e.g. 1, X</option> </param> - <param name="merge_unmapped_entries" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Merge failed and converted entries into single file"/> + <param name="merge_unmapped_entries" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Merge failed and converted entries into single file"/> </inputs> <outputs> <data name="output_valid" format="bed" label="${tool.name} (valid only) on ${on_string}" from_work_dir="output">
--- a/macros.xml Mon Sep 02 12:02:19 2024 +0000 +++ b/macros.xml Wed Jul 09 11:12:23 2025 +0000 @@ -5,7 +5,7 @@ <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.7.0</token> + <token name="@TOOL_VERSION@">0.7.3</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="stdio"> <stdio>
--- a/test-data/test_vcf_01_output.vcf.unmap Mon Sep 02 12:02:19 2024 +0000 +++ b/test-data/test_vcf_01_output.vcf.unmap Wed Jul 09 11:12:23 2025 +0000 @@ -4,4 +4,3 @@ ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods"> ##contig=<ID=1,length=195471971> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002 -1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0 Fail(REF==ALT)