annotate test-data/test_vcf_01_input.vcf @ 9:964835f32a94 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit ad4d739b4837dd61abc85614568d22f271f14568
author iuc
date Mon, 02 Sep 2024 12:00:58 +0000
parents b9cc7d5b0f37
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
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1 ##fileformat=VCFv4.2
143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
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2 ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype">
143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
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3 ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities">
143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
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4 ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
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b9cc7d5b0f37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit e10d34b547557b2bd4f0be69e31204bd5703e422"
iuc
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5 ##contig=<ID=1,length=195471971>
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143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
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6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002
143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
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7 1 10 rs11449 G A . PASS . GT 0/0 0/1
143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
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8 1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0
143ec4d1c8f3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
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9 1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0