Mercurial > repos > iuc > crossmap_region
annotate README.rst @ 2:a50ef4d58c90 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit ad4d739b4837dd61abc85614568d22f271f14568
author | iuc |
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date | Mon, 02 Sep 2024 12:01:39 +0000 |
parents | 8635b6b8a8f2 |
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8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
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1 CrossMap wrapper for Galaxy |
8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
diff
changeset
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2 =========================== |
8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
diff
changeset
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3 |
8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
diff
changeset
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4 CrossMap is versatile tool to convert genome coordinates or annotation files between genome |
8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
diff
changeset
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5 assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF, |
8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
diff
changeset
|
6 GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF |
8635b6b8a8f2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
iuc
parents:
diff
changeset
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7 and VCF, reading from remote servers and file compression are supported. |