Mercurial > repos > iuc > crossmap_region

diff crossmap_region.xml @ 1:eb66d7a04bf8 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit e10d34b547557b2bd4f0be69e31204bd5703e422"
author iuc
date Thu, 20 Jan 2022 04:31:00 +0000
parents 8635b6b8a8f2
children a50ef4d58c90
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line diff
--- a/crossmap_region.xml	Thu Jul 15 16:19:33 2021 +0000
+++ b/crossmap_region.xml	Thu Jan 20 04:31:00 2022 +0000
@@ -10,14 +10,20 @@
 CrossMap.py region
     '${chain_source.input_chain}'
     '${input}'
+    $output
+    --chromid $chromid
     --ratio $ratio
-    '$output'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="bed" label="BED file"
                help="BED format file must have at least 3 columns (chrom, start, end) and no more than 12 columns"/>
         <expand macro="chain" />
         <param argument="--ratio" type="float" min="0" max="1" value="0.85" label="Minimum ratio of bases that must remap."/>
+        <param argument="--chromid" type="select" label="Chromid" help="The style of chromosome IDs">
+            <option value="a" selected="true">Default (a)</option>
+            <option value="s">Short style (s)</option>
+            <option value="l">Long stype (l)</option>
+        </param>
     </inputs>
     <outputs>
         <data name="output" format="bed"/>