Mercurial > repos > iuc > crossmap_vcf

annotate test-data/test_vcf_01_input.vcf @ 5:97979c3d179f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
author iuc
date Thu, 17 Oct 2019 02:56:14 -0400
parents 734eedede47c
children 18f7e96459d2
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.2
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
2 ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype">
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
3 ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities">
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
4 ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
6 1 10 rs11449 G A . PASS . GT 0/0 0/1
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
7 1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0
734eedede47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
iuc
parents:
diff changeset
8 1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0