Mercurial > repos > iuc > crossmap_vcf

diff crossmap_vcf.xml @ 4:9d61d74f03a4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 2dbcf8154aff86b27a1dd535407d20168c4ef697"
author iuc
date Wed, 11 Sep 2019 19:29:21 -0400
parents 9db73ff23c9f
children 71730c177cdf
line wrap: on
line diff
--- a/crossmap_vcf.xml	Thu May 24 19:09:50 2018 -0400
+++ b/crossmap_vcf.xml	Wed Sep 11 19:29:21 2019 -0400
@@ -7,7 +7,7 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
 
-    <command><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
 #set $input_file = str($seq_source.input)
 
 CrossMap.py vcf
@@ -77,7 +77,6 @@
                     <has_text text="#CHROM"/>
                     <has_text_matching expression="2.*?rs11449.*?PASS"/>
                     <has_text_matching expression="2.*?rs84825.*?PASS"/>
-                    <has_text_matching expression="2.*?rs84823.*?PASS"/>
                 </assert_contents>
             </output>
             <output name="output_unmapped" file="test_vcf_01_output.vcf.unmap"/>