Mercurial > repos > iuc > customize_metaphlan_database

annotate macros.xml @ 13:2c8db4bf8834 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/metaphlan commit 26cbf16569d13b7ddbbbd99fc49ec15ce312a992
author iuc
date Fri, 14 Nov 2025 13:47:31 +0000
parents a755466eb47c
children
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a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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1 <macros>
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2c8db4bf8834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/metaphlan commit 26cbf16569d13b7ddbbbd99fc49ec15ce312a992
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2 <token name="@TOOL_VERSION@">4.2.4</token>
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3 <token name="@VERSION_SUFFIX@">0</token>
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2c8db4bf8834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/metaphlan commit 26cbf16569d13b7ddbbbd99fc49ec15ce312a992
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4 <token name="@PROFILE@">24.0</token>
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46fc97bb98f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
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5 <!-- Metaphlan DB compatible with this version of Metaphlan
46fc97bb98f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
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6 v4 introduced single genome level bins (SGB) and the index syntax differs from previous versions -->
46fc97bb98f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
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7 <token name="@IDX_VERSION@">SGB</token>
46fc97bb98f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
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8 <token name="@IDX_DATA_TABLE@">metaphlan_database_versioned</token>
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a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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9 <xml name="edam_ontology">
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10 <xrefs>
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11 <xref type="bio.tools">metaphlan</xref>
46fc97bb98f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
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12 </xrefs>
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a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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13 </xml>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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14 <xml name="requirements">
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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15 <requirements>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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16 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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17 <yield/>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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18 </requirements>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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19 </xml>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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20 <xml name="citations">
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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21 <citations>
2
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22 <citation type="doi">10.7554/eLife.65088</citation>
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a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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23 </citations>
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
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24 </xml>
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26 <xml name="subsample_common">
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27 <param argument="--mapping_subsampling" type="boolean" truevalue="--mapping_subsampling" falsevalue="" label="Subsampling on the mapping results" help="instead of on the reads"/>
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
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28 <param argument="--subsampling_seed" type="integer" optional="true" label="Subsampling seed" help="No value: random"/>
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
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29 </xml>
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30 </macros>