Mercurial > repos > iuc > customize_metaphlan_database

comparison customize_metaphlan_database.xml @ 2:487da152fb43 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit f1c6f4fe1e572ace84cf9106bc253603f55aac55"
author iuc
date Mon, 14 Jun 2021 12:48:54 +0000
parents a6c3f4f439f7
children
comparison
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1:025b0113ee97 2:487da152fb43
189 <param name="s_id" value="13076"/> 189 <param name="s_id" value="13076"/>
190 <param name="t_name" value="GCA_002847845"/> 190 <param name="t_name" value="GCA_002847845"/>
191 </repeat> 191 </repeat>
192 </conditional> 192 </conditional>
193 <output name="out_fasta" file="test-db.fasta" compare="sim_size"> 193 <output name="out_fasta" file="test-db.fasta" compare="sim_size">
194 <has_text text="13076__A0A2I1PE66__CYJ72_10760" /> 194 <assert_contents>
195 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
196 </assert_contents>
195 </output> 197 </output>
196 <output name="out_json" file="test-db.json" compare="sim_size"> 198 <output name="out_json" file="test-db.json" compare="sim_size">
197 <has_text text="13076__A0A2I1PE66__CYJ72_10760" /> 199 <assert_contents>
200 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
201 </assert_contents>
198 </output> 202 </output>
199 </test> 203 </test>
200 <test expect_num_outputs="2"> 204 <test expect_num_outputs="2">
201 <param name="in_fasta" value="test-db.fasta"/> 205 <param name="in_fasta" value="test-db.fasta"/>
202 <param name="in_json" value="test-db.json"/> 206 <param name="in_json" value="test-db.json"/>
203 <conditional name="op"> 207 <conditional name="op">
204 <param name="operation" value="remove_markers"/> 208 <param name="operation" value="remove_markers"/>
205 <param name="markers" value="marker.txt"/> 209 <param name="markers" value="marker.txt"/>
206 </conditional> 210 </conditional>
207 <output name="out_fasta" file="test-db-without-one-marker.fasta" compare="sim_size"> 211 <output name="out_fasta" file="test-db-without-one-marker.fasta" compare="sim_size">
212 <assert_contents>
208 <not_has_text text="13076__A0A2I1PE66__CYJ72_10760" /> 213 <not_has_text text="13076__A0A2I1PE66__CYJ72_10760" />
214 </assert_contents>
209 </output> 215 </output>
210 <output name="out_json" file="test-db-without-one-marker.json" compare="sim_size"> 216 <output name="out_json" file="test-db-without-one-marker.json" compare="sim_size">
217 <assert_contents>
211 <not_has_text text="13076__A0A2I1PE66__CYJ72_10760" /> 218 <not_has_text text="13076__A0A2I1PE66__CYJ72_10760" />
219 </assert_contents>
212 </output> 220 </output>
213 </test> 221 </test>
214 <test expect_num_outputs="2"> 222 <test expect_num_outputs="2">
215 <param name="in_fasta" value="test-db.fasta"/> 223 <param name="in_fasta" value="test-db.fasta"/>
216 <param name="in_json" value="test-db.json"/> 224 <param name="in_json" value="test-db.json"/>
217 <conditional name="op"> 225 <conditional name="op">
218 <param name="operation" value="keep_markers"/> 226 <param name="operation" value="keep_markers"/>
219 <param name="markers" value="marker.txt"/> 227 <param name="markers" value="marker.txt"/>
220 </conditional> 228 </conditional>
221 <output name="out_fasta" file="test-db-with-one-marker.fasta" compare="sim_size"> 229 <output name="out_fasta" file="test-db-with-one-marker.fasta" compare="sim_size">
222 <has_text text="13076__A0A2I1PE66__CYJ72_10760" /> 230 <assert_contents>
231 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
232 </assert_contents>
223 </output> 233 </output>
224 <output name="out_json" file="test-db-with-one-marker.json" compare="sim_size"> 234 <output name="out_json" file="test-db-with-one-marker.json" compare="sim_size">
225 <has_text text="13076__A0A2I1PE66__CYJ72_10760" /> 235 <assert_contents>
236 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
237 </assert_contents>
226 </output> 238 </output>
227 </test> 239 </test>
228 </tests> 240 </tests>
229 <help><![CDATA[ 241 <help><![CDATA[
230 What it does 242 What it does