Mercurial > repos > iuc > customize_metaphlan_database

comparison macros.xml @ 0:a6c3f4f439f7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author iuc
date Mon, 19 Apr 2021 20:56:51 +0000
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children 025b0113ee97
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-1:000000000000 0:a6c3f4f439f7
1 <?xml version="1.0"?>
2 <macros>
3 <token name="@TOOL_VERSION@">3.0.7</token>
4 <token name="@VERSION_SUFFIX@">0</token>
5 <token name="@PROFILE@">20.01</token>
6 <xml name="edam_ontology">
7 <edam_topics>
8 <edam_topic>topic_3174</edam_topic>
9 <edam_topic>topic_0194</edam_topic>
10 </edam_topics>
11 <edam_operations>
12 <edam_operation>operation_2478</edam_operation>
13 <edam_operation>operation_0324</edam_operation>
14 </edam_operations>
15 </xml>
16 <xml name="requirements">
17 <requirements>
18 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
19 <yield/>
20 </requirements>
21 </xml>
22 <xml name="citations">
23 <citations>
24 <citation type="doi">1101/2020.11.19.388223</citation>
25 </citations>
26 </xml>
27 <token name="@FILE_FORMATS@">fastq,fastq.gz,fastq.bz2,fasta,fasta.gz,fasta.bz2</token>
28 <xml name="tax_lev">
29 <param argument="--tax_lev" type="select" label="Taxonomic level for the relative abundance output">
30 <option value="a" selected="true">All taxonomic levels</option>
31 <option value="k">Kingdoms only</option>
32 <option value="p">Phyla only</option>
33 <option value="c">Classes only</option>
34 <option value="o">Orders only</option>
35 <option value="f">Families only</option>
36 <option value="g">Genera only</option>
37 <option value="s">Species only</option>
38 </param>
39 </xml>
40 </macros>