Mercurial > repos > iuc > customize_metaphlan_database

diff generate_test_data.sh @ 0:a6c3f4f439f7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author: iuc
date: Mon, 19 Apr 2021 20:56:51 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/generate_test_data.sh	Mon Apr 19 20:56:51 2021 +0000
@@ -0,0 +1,49 @@
+#/usr/bin/env bash
+
+metaphlan_hclust_heatmap.py \
+    --in test-data/merged_community_profile.tabular \
+    --out test-data/heatmap.png \
+    -m 'average' \
+    -d 'braycurtis' \
+    -f 'correlation' \
+    --minv '0' \
+    --tax_lev 'a' \
+    --sdend_h '0.1' \
+    --fdend_w '0.1' \
+    --cm_h '0.03' \
+    --font_size '7' \
+    --clust_line_w '1' \
+    --perc '90' \
+    -c 'jet'
+
+metaphlan_hclust_heatmap.py \
+    --in test-data/merged_community_profile.tabular \
+    --out test-data/heatmap.pdf \
+    -m 'ward' \
+    -d 'euclidean' \
+    -f 'euclidean' \
+    --minv '0' \
+    --tax_lev 'a' \
+    --sdend_h '0.1' \
+    --fdend_w '0.1' \
+    --cm_h '0.03' \
+    --font_size '7' \
+    --clust_line_w '1' \
+    --perc '90' \
+    -c 'pink'
+
+metaphlan_hclust_heatmap.py \
+    --in test-data/merged_community_profile.tabular \
+    --out test-data/heatmap.svg \
+    -m 'complete' \
+    -d 'hamming' \
+    -f 'matching' \
+    --minv '0' \
+    --tax_lev 'a' \
+    --sdend_h '0.1' \
+    --fdend_w '0.1' \
+    --cm_h '0.03' \
+    --font_size '7' \
+    --clust_line_w '1' \
+    --perc '90' \
+    -c 'pink'
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