Mercurial > repos > iuc > customize_metaphlan_database

diff macros.xml @ 11:a755466eb47c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
author iuc
date Mon, 29 Jul 2024 07:14:38 +0000
parents 254cb00a578f
children
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--- a/macros.xml	Tue Apr 30 09:08:54 2024 +0000
+++ b/macros.xml	Mon Jul 29 07:14:38 2024 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">4.0.6</token>
-    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@TOOL_VERSION@">4.1.1</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">22.05</token>
     <!-- Metaphlan DB compatible with this version of Metaphlan
     v4 introduced single genome level bins (SGB) and the index syntax differs from previous versions --> 
@@ -23,4 +23,9 @@
             <citation type="doi">10.7554/eLife.65088</citation>
         </citations>
     </xml>
+
+    <xml name="subsample_common">
+        <param argument="--mapping_subsampling" type="boolean" truevalue="--mapping_subsampling" falsevalue="" label="Subsampling on the mapping results" help="instead of on the reads"/>
+        <param argument="--subsampling_seed" type="integer" optional="true" label="Subsampling seed" help="No value: random"/>
+    </xml>
 </macros>