Mercurial > repos > iuc > dada2_dada

comparison dada2_dada.xml @ 1:6b4ddc3b64bd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7"
author iuc
date Thu, 05 Dec 2019 17:59:37 -0500
parents ce4aec98949d
children 2222f08c8316
comparison
equal deleted inserted replaced
0:ce4aec98949d 1:6b4ddc3b64bd
102 <test> 102 <test>
103 <param name="batch_cond|batch_select" value="no"/> 103 <param name="batch_cond|batch_select" value="no"/>
104 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> 104 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" />
105 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> 105 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" />
106 <output_collection name="data_collection" type="list"> 106 <output_collection name="data_collection" type="list">
107 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada"/> 107 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada" compare="sim_size" delta="10000"/>
108 </output_collection> 108 </output_collection>
109 </test> 109 </test>
110 <!-- default, batch --> 110 <!-- default, batch -->
111 <test> 111 <test>
112 <param name="batch_cond|batch_select" value="yes"/> 112 <param name="batch_cond|batch_select" value="yes"/>
113 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> 113 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" />
114 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> 114 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" />
115 <output name="dada" value="dada_F3D0_R1.Rdata" ftype="dada2_dada" /> 115 <output name="dada" value="dada_F3D0_R1.Rdata" ftype="dada2_dada" compare="sim_size" delta="10000"/>
116 </test> 116 </test>
117 <!-- test non-default options --> 117 <!-- test non-default options -->
118 <test> 118 <test>
119 <param name="batch_cond|batch_select" value="no"/> 119 <param name="batch_cond|batch_select" value="no"/>
120 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> 120 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" />
121 <param name="batch_cond|pool" value="pseudo"/> 121 <param name="batch_cond|pool" value="pseudo"/>
122 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> 122 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" />
123 <output_collection name="data_collection" type="list"> 123 <output_collection name="data_collection" type="list">
124 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada"/> 124 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada" compare="sim_size" delta="10000"/>
125 </output_collection> 125 </output_collection>
126 </test> 126 </test>
127 </tests> 127 </tests>
128 <help><![CDATA[ 128 <help><![CDATA[
129 Description 129 Description