Mercurial > repos > iuc > dada2_dada

comparison dada2_dada.xml @ 6:84fd33a60b35 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit ea6c9c638e742c097b0ef294161eeea447c09e06
author iuc
date Fri, 30 Jun 2023 07:58:35 +0000
parents 2222f08c8316
children 00f5005840fa
comparison
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5:1c35dadbe76f 6:84fd33a60b35
1 <tool id="dada2_dada" name="dada2: dada" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09"> 1 <tool id="dada2_dada" name="dada2: dada" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09">
2 <description>Remove sequencing errors</description> 2 <description>Remove sequencing errors</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <expand macro="stdio"/> 8 <expand macro="stdio"/>
8 <expand macro="version_command"/> 9 <expand macro="version_command"/>
9 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
10 #if $batch_cond.batch_select == "no" 11 #if $batch_cond.batch_select == "no"
95 <!-- not needed for end user I guess 96 <!-- not needed for end user I guess
96 <expand macro="errorEstimationFunction"/> 97 <expand macro="errorEstimationFunction"/>
97 <param name="selfconsist" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Alternate between sample inference and error rate estimation until convergence"/>--> 98 <param name="selfconsist" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Alternate between sample inference and error rate estimation until convergence"/>-->
98 </inputs> 99 </inputs>
99 <outputs> 100 <outputs>
100 <data name="dada" format="dada2_dada"> 101 <data name="dada" format="dada2_dada" label="${tool.name} on ${on_string}">
101 <filter>batch_cond['batch_select']=="yes"</filter> 102 <filter>batch_cond['batch_select']=="yes"</filter>
102 </data> 103 </data>
103 <collection name="data_collection" type="list"> 104 <collection name="data_collection" type="list" label="${tool.name} on ${on_string}: outputs">
104 <discover_datasets pattern="(?P&lt;name&gt;.+)\.dada2_dada" format="dada2_dada" directory="output" /> 105 <discover_datasets pattern="(?P&lt;name&gt;.+)\.dada2_dada" format="dada2_dada" directory="output"/>
105 <filter>batch_cond['batch_select']=="no"</filter> 106 <filter>batch_cond['batch_select']=="no"</filter>
106 </collection> 107 </collection>
107 </outputs> 108 </outputs>
108 <tests> 109 <tests>
109 <!-- default, non batch --> 110 <!-- default, non batch -->