Mercurial > repos > iuc > dada2_learnerrors

comparison dada2_learnErrors.xml @ 1:39638e0aff59 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7"
author iuc
date Thu, 05 Dec 2019 18:00:17 -0500
parents fd892c845981
children c48d42d65d2b
comparison
equal deleted inserted replaced
0:fd892c845981 1:39638e0aff59
56 <data name="plot" format="pdf" from_work_dir="plot.pdf" label="${tool.name} on ${on_string}: error rates plot"/> 56 <data name="plot" format="pdf" from_work_dir="plot.pdf" label="${tool.name} on ${on_string}: error rates plot"/>
57 </outputs> 57 </outputs>
58 <tests> 58 <tests>
59 <test> 59 <test>
60 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastqsanger.gz"/> 60 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastqsanger.gz"/>
61 <output name="errors" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates"/> 61 <output name="errors" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="7000"/>
62 <output name="plot" value="learnErrors_F3D0_R1.pdf" ftype="pdf" compare="sim_size" /> 62 <output name="plot" value="learnErrors_F3D0_R1.pdf" ftype="pdf" compare="sim_size" delta="5000" />
63 </test> 63 </test>
64 <!-- test w non-default parameters --> 64 <!-- test w non-default parameters -->
65 <test> 65 <test>
66 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastqsanger.gz"/> 66 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastqsanger.gz"/>
67 <param name="nbases" value="6" /> 67 <param name="nbases" value="6" />
71 <param name="advanced|omegac" value="1e-10" /> 71 <param name="advanced|omegac" value="1e-10" />
72 <param name="plotopt|obs" value="FALSE" /> 72 <param name="plotopt|obs" value="FALSE" />
73 <param name="plotopt|err_out" value="FALSE" /> 73 <param name="plotopt|err_out" value="FALSE" />
74 <param name="plotopt|err_in" value="TRUE" /> 74 <param name="plotopt|err_in" value="TRUE" />
75 <param name="plotopt|nominalQ" value="FALSE"/> 75 <param name="plotopt|nominalQ" value="FALSE"/>
76 <output name="errors" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="14000"/> 76 <output name="errors" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="13000"/>
77 <output name="plot" value="learnErrors_F3D0_R1.pdf" ftype="pdf" compare="sim_size" /> 77 <output name="plot" value="learnErrors_F3D0_R1.pdf" ftype="pdf" compare="sim_size" delta="5000" />
78 </test> 78 </test>
79 <!-- TODO test w multiple inputs --> 79 <!-- TODO test w multiple inputs -->
80 </tests> 80 </tests>
81 <help><![CDATA[ 81 <help><![CDATA[
82 Description 82 Description