Mercurial > repos > iuc > dada2_learnerrors

diff dada2_learnErrors.xml @ 3:afdfa35a89d9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
author iuc
date Tue, 14 Jul 2020 07:38:24 -0400
parents c48d42d65d2b
children 0776d824d896
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line diff
--- a/dada2_learnErrors.xml	Mon Mar 16 07:44:03 2020 -0400
+++ b/dada2_learnErrors.xml	Tue Jul 14 07:38:24 2020 -0400
@@ -59,7 +59,12 @@
         <test>
             <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz,filterAndTrim_F3D141_R1.fq.gz" ftype="fastqsanger.gz"/>
             <output name="errors" value="learnErrors_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="7000"/>
-            <output name="plot" value="learnErrors_R1.pdf" ftype="pdf" compare="sim_size" delta="5000" />
+            <output name="plot" ftype="pdf">
+                <assert_contents>
+                    <has_text text="%PDF"/>
+                    <has_text text="%%EOF"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- test w non-default parameters -->
         <test>
@@ -74,7 +79,12 @@
             <param name="plotopt|err_in" value="TRUE" />
             <param name="plotopt|nominalQ" value="FALSE"/>
             <output name="errors" value="learnErrors_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="13000"/>
-            <output name="plot" value="learnErrors_R1.pdf" ftype="pdf" compare="sim_size" delta="5000" />
+            <output name="plot" ftype="pdf">
+                <assert_contents>
+                    <has_text text="%PDF"/>
+                    <has_text text="%%EOF"/>
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[