Mercurial > repos > iuc > dada2_makesequencetable

diff dada2_makeSequenceTable.xml @ 2:99c6929236fa draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author iuc
date Mon, 16 Mar 2020 07:54:26 -0400
parents 9ccec6ed8e82
children 8470de786d47
line wrap: on
line diff
--- a/dada2_makeSequenceTable.xml	Thu Dec 05 18:00:38 2019 -0500
+++ b/dada2_makeSequenceTable.xml	Mon Mar 16 07:54:26 2020 -0400
@@ -49,7 +49,7 @@
     </configfiles>
     <inputs>
         <param argument="samples" type="data" multiple="true" format="@DADA_UNIQUES@" label="samples" />
-        <param argument="orderBy" type="select" label="Column order">
+        <param argument="orderBy" type="select" label="Order ASVs by">
             <option value="abundance">abundance</option>
             <option value="nsamples">nsamples</option>
         </param>
@@ -74,17 +74,17 @@
     </outputs>
     <tests>
         <test expect_num_outputs="2">
-            <param name="samples" ftype="dada2_mergepairs" value="mergePairs_F3D0.Rdata"/>
-			<output name="stable" value="makeSequenceTable_F3D0.tab" ftype="dada2_sequencetable" lines_diff="2"/>
-            <output name="plot_output" value="makeSequenceTable_F3D0.pdf" ftype="pdf" compare="sim_size" delta="3000" />
+            <param name="samples" ftype="dada2_mergepairs" value="mergePairs_F3D0_S188_L001.Rdata,mergePairs_F3D141_S207_L001.Rdata"/>
+			<output name="stable" value="makeSequenceTable.tab" ftype="dada2_sequencetable" lines_diff="2"/>
+            <output name="plot_output" value="makeSequenceTable.pdf" ftype="pdf" compare="sim_size" delta="3000" />
         </test>
         <test expect_num_outputs="1">
-            <param name="samples" ftype="dada2_mergepairs" value="mergePairs_F3D0.Rdata"/>
+            <param name="samples" ftype="dada2_mergepairs" value="mergePairs_F3D0_S188_L001.Rdata,mergePairs_F3D141_S207_L001.Rdata"/>
             <param name="filter_cond|filter_select" value="minmax"/>
             <param name="filter_cond|min" value="200"/>
             <param name="filter_cond|max" value="300"/>
             <param name="plot" value="no" />
-            <output name="stable" value="makeSequenceTable_F3D0.tab" ftype="dada2_sequencetable" lines_diff="2" />
+            <output name="stable" value="makeSequenceTable.tab" ftype="dada2_sequencetable" lines_diff="2" />
         </test>
     </tests>
     <help><![CDATA[