Mercurial > repos > iuc > dada2_plotcomplexity

comparison macros.xml @ 12:2875d977c533 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/dada2 commit 034af1aa838fb62aa93c10332b6143ab1a1f3cef
author iuc
date Wed, 18 Mar 2026 13:09:18 +0000
parents 224abe7c80ed
children
comparison
equal deleted inserted replaced
11:224abe7c80ed 12:2875d977c533
11 <xref type="bio.tools">dada2</xref> 11 <xref type="bio.tools">dada2</xref>
12 <xref type="bioconductor">dada2</xref> 12 <xref type="bioconductor">dada2</xref>
13 </xrefs> 13 </xrefs>
14 </xml> 14 </xml>
15 <token name="@PROFILE@">24.2</token> 15 <token name="@PROFILE@">24.2</token>
16 <token name="@TOOL_VERSION@">1.34.0</token> 16 <token name="@TOOL_VERSION@">1.38.0</token>
17 <token name="@VERSION_SUFFIX@">1</token> 17 <token name="@VERSION_SUFFIX@">0</token>
18 18
19 <xml name="version_command"> 19 <xml name="version_command">
20 <version_command><![CDATA[ 20 <version_command><![CDATA[
21 echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ") 21 echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
22 ]]></version_command> 22 ]]></version_command>
114 <xml name="errorEstimationFunction"> 114 <xml name="errorEstimationFunction">
115 <param name="errfoo" argument="errorEstimationFunction" type="select" label="Error function"> 115 <param name="errfoo" argument="errorEstimationFunction" type="select" label="Error function">
116 <option value="loessErrfun">loess: Use a loess fit to estimate error rates from transition counts</option> 116 <option value="loessErrfun">loess: Use a loess fit to estimate error rates from transition counts</option>
117 <option value="noqualErrfun">noqual: Estimate error rates for each type of transition while ignoring quality scores.</option> 117 <option value="noqualErrfun">noqual: Estimate error rates for each type of transition while ignoring quality scores.</option>
118 <option value="PacBioErrfun">PacBio: Estimate error rates from transition counts in PacBio CCS data.</option> 118 <option value="PacBioErrfun">PacBio: Estimate error rates from transition counts in PacBio CCS data.</option>
119 <option value="BinnedQualErrfun">BinnedQualErrfun: Use piecewise linear fit to estimate error rates from transition counts derived from binned quality score data. </option>
120 </param>
121 <param name="quality_bins" type="text" value="" label="Quality bins" help="Quality bins to be used for BinnedQualErrfun">
122 <validator type="regex" message="Must be a comma separate list of numbers">|([0-9]+(,[0-9]+)+)</validator>
119 </param> 123 </param>
120 </xml> 124 </xml>
121 <token name="@HELP_OVERVIEW@"><![CDATA[ 125 <token name="@HELP_OVERVIEW@"><![CDATA[
122 Overview 126 Overview
123 ........ 127 ........