Mercurial > repos > iuc > dada2_removebimeradenovo

comparison dada2_removeBimeraDenovo.xml @ 2:5b752525bd6f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author iuc
date Mon, 16 Mar 2020 07:37:41 -0400
parents 7f8f0e9fcb37
children 1bc3657cd694
comparison
equal deleted inserted replaced
1:7f8f0e9fcb37 2:5b752525bd6f
63 <filter>unqs.ext == "dada2_sequencetable"</filter> 63 <filter>unqs.ext == "dada2_sequencetable"</filter>
64 </data> 64 </data>
65 </outputs> 65 </outputs>
66 <tests> 66 <tests>
67 <test expect_num_outputs="1"> 67 <test expect_num_outputs="1">
68 <param name="unqs" ftype="dada2_sequencetable" value="makeSequenceTable_F3D0.tab"/> 68 <param name="unqs" ftype="dada2_sequencetable" value="makeSequenceTable.tab"/>
69 <output name="stable_sequencetable" value="removeBimeraDenovo_F3D0.tab" ftype="dada2_sequencetable" /> 69 <output name="stable_sequencetable" value="removeBimeraDenovo.tab" ftype="dada2_sequencetable" />
70 </test> 70 </test>
71 <!-- dada input --> 71 <!-- dada input -->
72 <test expect_num_outputs="1"> 72 <test expect_num_outputs="1">
73 <param name="unqs" ftype="dada2_dada" value="dada_F3D0_R1.Rdata"/> 73 <param name="unqs" ftype="dada2_dada" value="dada_F3D0_S188_L001_R1.Rdata"/>
74 <output name="stable_uniques" value="removeBimeraDenovo_F3D0_dada_uniques.tab" ftype="dada2_uniques" /> 74 <output name="stable_uniques" value="removeBimeraDenovo_F3D0_dada_uniques.tab" ftype="dada2_uniques" />
75 </test> 75 </test>
76 <!-- mergepairs input + non default--> 76 <!-- mergepairs input + non default-->
77 <test expect_num_outputs="1"> 77 <test expect_num_outputs="1">
78 <param name="unqs" ftype="dada2_mergepairs" value="mergePairs_F3D0.Rdata"/> 78 <param name="unqs" ftype="dada2_mergepairs" value="mergePairs_F3D0_S188_L001.Rdata"/>
79 <param name="method" value="pooled"/> 79 <param name="method" value="pooled"/>
80 <output name="stable_mergepairs" value="removeBimeraDenovo_F3D0_mergepairs.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400"/> 80 <output name="stable_mergepairs" value="removeBimeraDenovo_F3D0_mergepairs.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400"/>
81 </test> 81 </test>
82 </tests> 82 </tests>
83 <help><![CDATA[ 83 <help><![CDATA[