Mercurial > repos > iuc > dada2_seqcounts
diff dada2_seqCounts.xml @ 2:f74c56549143 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author | iuc |
---|---|
date | Mon, 16 Mar 2020 08:13:07 -0400 |
parents | d26cea4b4cc4 |
children | 9058d8943303 |
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--- a/dada2_seqCounts.xml Thu Dec 05 18:01:18 2019 -0500 +++ b/dada2_seqCounts.xml Mon Mar 16 08:13:07 2020 -0400 @@ -89,38 +89,38 @@ names of the elements of the input collection for <param ... multiple="true">]) --> <test> <repeat name="inrep"> - <param name="input" value="filterAndTrim_F3D0.tab" ftype="tabular"/> + <param name="input" value="F3D0_S188_L001_R1_001.tab" ftype="tabular"/> <param name="name" value="filter"/> </repeat> - <output name="counts" value="seqCounts_F3D0_filter.tab" ftype="tabular" /> + <output name="counts" value="seqCounts_filter.tab" ftype="tabular" /> </test> <test> <repeat name="inrep"> - <param name="input" value="dada_F3D0_R1.Rdata" ftype="dada2_dada"/> + <param name="input" value="dada_F3D0_S188_L001_R1.Rdata,dada_F3D141_S207_L001_R1.Rdata" ftype="dada2_dada"/> <param name="name" value="dadaF"/> </repeat> - <output name="counts" value="seqCounts_F3D0_dadaF.tab" ftype="tabular" /> + <output name="counts" value="seqCounts_dadaF.tab" ftype="tabular" /> </test> <test> <repeat name="inrep"> - <param name="input" value="mergePairs_F3D0.Rdata" ftype="dada2_mergepairs"/> + <param name="input" value="mergePairs_F3D0_S188_L001.Rdata,mergePairs_F3D141_S207_L001.Rdata" ftype="dada2_mergepairs"/> <param name="name" value="merge"/> </repeat> - <output name="counts" value="seqCounts_F3D0_merge.tab" ftype="tabular" /> + <output name="counts" value="seqCounts_merge.tab" ftype="tabular" /> </test> <test> <repeat name="inrep"> - <param name="input" value="makeSequenceTable_F3D0.tab" ftype="dada2_sequencetable"/> + <param name="input" value="makeSequenceTable.tab" ftype="dada2_sequencetable"/> <param name="name" value="seqtab"/> </repeat> - <output name="counts" value="seqCounts_F3D0_seqtab.tab" ftype="tabular" /> + <output name="counts" value="seqCounts_seqtab.tab" ftype="tabular" /> </test> <test> <repeat name="inrep"> - <param name="input" value="removeBimeraDenovo_F3D0.tab" ftype="dada2_sequencetable"/> + <param name="input" value="removeBimeraDenovo.tab" ftype="dada2_sequencetable"/> <param name="name" value="nochim"/> </repeat> - <output name="counts" value="seqCounts_F3D0_nochim.tab" ftype="tabular" /> + <output name="counts" value="seqCounts_nochim.tab" ftype="tabular" /> </test> </tests> <help><![CDATA[ @@ -135,7 +135,10 @@ **Inputs:** Any number of results of dada2 steps in the following form: -- a collection of results from dada, or mergePairs; or the collection of statistics from filterAndTrim (the identifiers of the collection elements are used as sample names) + + +- a collection of results from dada, mergePairs, or the collection of statistics from filterAndTrim (the identifiers of the collection elements are used as sample names) +- the results of dada in non-batch mode - the result of makeSequenceTable or removeBimeraDenovo **Output:**