Mercurial > repos > iuc > das_tool
comparison das_tool.xml @ 3:e23e7bf8491b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/das_tool commit 9c2eb2c9e495cad54084973587d07e8035f3fd9b
author | iuc |
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date | Thu, 06 Jul 2023 12:27:11 +0000 |
parents | a8e434ebe961 |
children | 7d997332582e |
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2:bdc1f3694a23 | 3:e23e7bf8491b |
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81 <data name="eval" format="tabular" from_work_dir="outputs_allBins.eval" label="${tool.name} on ${on_string}: Quality and completeness estimates of input bin sets" > | 81 <data name="eval" format="tabular" from_work_dir="outputs_allBins.eval" label="${tool.name} on ${on_string}: Quality and completeness estimates of input bin sets" > |
82 <filter>output['write_bin_evals']</filter> | 82 <filter>output['write_bin_evals']</filter> |
83 </data> | 83 </data> |
84 <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins"> | 84 <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins"> |
85 <filter>output['write_bins']['write_bins'] != ""</filter> | 85 <filter>output['write_bins']['write_bins'] != ""</filter> |
86 <discover_datasets pattern=".*?\.(?P<designation>.*)\.fa" format="fasta" directory="outputs_DASTool_bins" /> | 86 <discover_datasets pattern="^(?!unbinned\.fa)((?P<designation>.*)\.fa)" format="fasta" directory="outputs_DASTool_bins"/> |
87 </collection> | 87 </collection> |
88 <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs" > | 88 <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs"> |
89 <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter> | 89 <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter> |
90 </data> | 90 </data> |
91 <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" > | 91 <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" > |
92 <filter>output['proteins']</filter> | 92 <filter>output['proteins']</filter> |
93 </data> | 93 </data> |
175 <assert_contents> | 175 <assert_contents> |
176 <has_text text="Parameters"/> | 176 <has_text text="Parameters"/> |
177 <has_text text="Predicting genes"/> | 177 <has_text text="Predicting genes"/> |
178 </assert_contents> | 178 </assert_contents> |
179 </output> | 179 </output> |
180 <output_collection name="bins" count="1"> | 180 <output_collection name="bins" count="1"> <!--unbinned.fa must not appear in bins collection. unbinned.fa appears as additional output below.--> |
181 <element name="8" ftype="fasta"> | 181 <element name="metabat.8" ftype="fasta"> |
182 <assert_contents> | 182 <assert_contents> |
183 <has_text text=">Ley3_66761_scaffold_6"/> | 183 <has_text text=">Ley3_66761_scaffold_6"/> |
184 </assert_contents> | 184 </assert_contents> |
185 </element> | 185 </element> |
186 </output_collection> | 186 </output_collection> |