Mercurial > repos > iuc > das_tool

changeset 3:e23e7bf8491b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/das_tool commit 9c2eb2c9e495cad54084973587d07e8035f3fd9b
author iuc
date Thu, 06 Jul 2023 12:27:11 +0000
parents bdc1f3694a23
children 7d997332582e
files das_tool.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/das_tool.xml	Mon Dec 26 17:48:00 2022 +0000
+++ b/das_tool.xml	Thu Jul 06 12:27:11 2023 +0000
@@ -83,9 +83,9 @@
         </data>
         <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins">
             <filter>output['write_bins']['write_bins'] != ""</filter>
-            <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.fa" format="fasta" directory="outputs_DASTool_bins" />
+            <discover_datasets pattern="^(?!unbinned\.fa)((?P&lt;designation&gt;.*)\.fa)" format="fasta" directory="outputs_DASTool_bins"/>
           </collection>
-        <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs" >
+        <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs">
             <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter>
         </data>
         <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" >
@@ -177,8 +177,8 @@
                     <has_text text="Predicting genes"/>
                 </assert_contents>
             </output>
-            <output_collection name="bins" count="1">
-                <element name="8" ftype="fasta">
+            <output_collection name="bins" count="1"> <!--unbinned.fa must not appear in bins collection. unbinned.fa appears as additional output below.-->
+                <element name="metabat.8" ftype="fasta">
                     <assert_contents>
                         <has_text text=">Ley3_66761_scaffold_6"/>
                     </assert_contents>