Mercurial > repos > iuc > data_manager_bakta

comparison data_manager/bakta_build_database.py @ 1:bb463043c93e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bakta_database commit fb13b466a4c529d701a181535568b5f73e7f832f
author iuc
date Thu, 02 Mar 2023 14:47:02 +0000
parents a19189a128cb
children 3e73c97f025d
comparison
equal deleted inserted replaced
0:a19189a128cb 1:bb463043c93e
76 self.db_version = db_version 76 self.db_version = db_version
77 return filtered_version 77 return filtered_version
78 78
79 def get_data_manager(self, bakta_database_info): 79 def get_data_manager(self, bakta_database_info):
80 self.bakta_table_list = self.get_data_table_format() 80 self.bakta_table_list = self.get_data_table_format()
81 bakta_value = f"V{bakta_database_info['major']}." \ 81 bakta_name = f"V{bakta_database_info['major']}." \
82 f"{bakta_database_info['minor']}_" \ 82 f"{bakta_database_info['minor']}_" \
83 f"{bakta_database_info['date']}" 83 f"{bakta_database_info['date']}"
84 tool_version = str(f"{bakta_database_info['software-min']['major']}." 84 tool_version = str(f"{bakta_database_info['software-min']['major']}."
85 f"{bakta_database_info['software-min']['minor']}") 85 f"{bakta_database_info['software-min']['minor']}")
86 data_info = dict(value=bakta_database_info['record'], 86 data_info = dict(value=bakta_name,
87 dbkey=bakta_value, 87 dbkey=bakta_database_info['record'],
88 bakta_version=tool_version, 88 bakta_version=tool_version,
89 path="db") 89 path="db")
90 self.bakta_table_list["data_tables"][self.data_table_name] = [data_info] 90 self.bakta_table_list["data_tables"][self.data_table_name] = [data_info]
91 return self.bakta_table_list 91 return self.bakta_table_list
92 92