Mercurial > repos > iuc > data_manager_bowtie_index_builder

comparison data_manager_conf.xml @ 0:0a0c648498e2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 418f745190d77983c3fb09badb6298493bccf4e0
author iuc
date Tue, 05 Jan 2016 12:57:11 -0500
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children cb157f55b4fd
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-1:000000000000 0:0a0c648498e2
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/bowtie_index_builder.xml" id="bowtie_index_builder" version="0.0.1">
4 <data_table name="bowtie_indexes">
5 <output>
6 <column name="value" />
7 <column name="dbkey" />
8 <column name="name" />
9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True">
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index</target>
13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/${path}</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
19 </data_manager>
20 <data_manager tool_file="data_manager/bowtie_color_space_index_builder.xml" id="bowtie_color_space_index_builder" version="0.0.1">
21 <data_table name="bowtie_indexes_color">
22 <output>
23 <column name="value" />
24 <column name="dbkey" />
25 <column name="name" />
26 <column name="path" output_ref="out_file" >
27 <move type="directory" relativize_symlinks="True">
28 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
29 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index/color</target> <!-- confirm this as preferred location -->
30 </move>
31 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/color/${path}</value_translation>
32 <value_translation type="function">abspath</value_translation>
33 </column>
34 </output>
35 </data_table>
36 </data_manager>
37 </data_managers>