Mercurial > repos > iuc > data_manager_bowtie_index_builder
view data_manager/bowtie_index_builder.xml @ 4:86e9af693a33 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 67d76bc24ec6a5eb145f05416dc2098999897bae
author | iuc |
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date | Fri, 09 Jun 2017 06:12:02 -0400 |
parents | 086edfff112b |
children | 39a922d01b0d |
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<tool id="bowtie_index_builder_data_manager" name="Bowtie index" tool_type="manage_data" version="1.2.0"> <description>builder</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/bowtie_index_builder.py' '${out_file}' --fasta_filename '${all_fasta_source.fields.path}' --fasta_dbkey '${all_fasta_source.fields.dbkey}' --fasta_description '${all_fasta_source.fields.name}' --data_table_name bowtie_indexes ]]></command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> <options from_data_table="all_fasta"/> </param> <param name="sequence_name" type="text" value="" label="Name of sequence" help="Leave blank to use all_fasta name" /> <param name="sequence_id" type="text" value="" label="ID for sequence" help="Leave blank to use all_fasta id" /> </inputs> <outputs> <data name="out_file" format="data_manager_json"/> </outputs> <help><![CDATA[ .. class:: infomark **Notice:** If you leave name, description, or id blank, it will be generated automatically. ]]></help> <citations> <citation type="doi">10.1186/gb-2009-10-3-r25</citation> </citations> </tool>