# HG changeset patch # User iuc # Date 1577033866 18000 # Node ID edacc4bcd3cbcdeb04ede3aee1aafab4990ca39d # Parent 6ba1ec5f86fc37af0c49b7aa45ea7423947ef821 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 1c0a28222ac235e77b2a792c1ebca027a746c220" diff -r 6ba1ec5f86fc -r edacc4bcd3cb data_manager/kraken2_build_database.py --- a/data_manager/kraken2_build_database.py Sat Aug 03 05:31:12 2019 -0400 +++ b/data_manager/kraken2_build_database.py Sun Dec 22 11:57:46 2019 -0500 @@ -354,7 +354,7 @@ else: sys.exit("Invalid database type") - open(args.data_manager_json, 'w').write(json.dumps(data_manager_output)) + open(args.data_manager_json, 'w').write(json.dumps(data_manager_output, sort_keys=True)) if __name__ == "__main__": diff -r 6ba1ec5f86fc -r edacc4bcd3cb data_manager/kraken2_build_database.xml --- a/data_manager/kraken2_build_database.xml Sat Aug 03 05:31:12 2019 -0400 +++ b/data_manager/kraken2_build_database.xml Sun Dec 22 11:57:46 2019 -0500 @@ -1,5 +1,5 @@ - + @@ -11,6 +11,7 @@ database builder kraken2 + python kraken2 -version | head -n 1 | awk '{print $NF}' diff -r 6ba1ec5f86fc -r edacc4bcd3cb test-data/kraken2_custom_data_manager.json --- a/test-data/kraken2_custom_data_manager.json Sat Aug 03 05:31:12 2019 -0400 +++ b/test-data/kraken2_custom_data_manager.json Sun Dec 22 11:57:46 2019 -0500 @@ -1,1 +1,1 @@ -{"data_tables": {"kraken2_databases": [{"path": "database", "name": "database", "value": "database"}]}} \ No newline at end of file +{"data_tables": {"kraken2_databases": [{"name": "database", "path": "database", "value": "database"}]}} \ No newline at end of file