Mercurial > repos > iuc > data_manager_bwameth_index_builder

diff data_manager/bwameth_index_builder.py @ 5:5ab25caa7b7d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 2c7b238779034cd7b6f459aa972db636af970525"
author iuc
date Mon, 03 Feb 2020 17:19:38 -0500
parents e7ca32457e36
children fca923910aaa
line wrap: on
line diff
--- a/data_manager/bwameth_index_builder.py	Tue Oct 01 17:53:16 2019 -0400
+++ b/data_manager/bwameth_index_builder.py	Mon Feb 03 17:19:38 2020 -0500
@@ -22,7 +22,7 @@
     proc = subprocess.Popen(args=cmd, shell=False, cwd=target_directory)
     return_code = proc.wait()
     if return_code:
-        print >> sys.stderr, "Error building index."
+        print("Error building index.", file=sys.stderr)
         sys.exit( return_code )
     data_table_entry = dict(value=args.dbkey, dbkey=args.dbkey, name=args.name, path=sym_linked_fasta_filename)
     _add_data_table_entry(data_manager_dict, data_table_name, data_table_entry)
@@ -57,7 +57,7 @@
     build_bwameth_index(data_manager_dict, params, args)
 
     # save info to json file
-    open(filename, 'wb').write(dumps(data_manager_dict))
+    open(filename, 'w').write(dumps(data_manager_dict, sort_keys=True))
 
 
 if __name__ == "__main__":