Mercurial > repos > iuc > data_manager_cat

annotate data_manager_conf.xml @ 1:74af283d8ebd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:47:10 +0000
parents cffd8e2382cf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
2 <data_managers>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
3 <data_manager tool_file="data_manager/data_manager_cat.xml" id="data_manager_cat" >
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
4 <data_table name="cat_database"> <!-- Defines a Data Table to be modified. -->
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
5 <output> <!-- Handle the output of the Data Manager Tool -->
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
8 <column name="database_folder" output_ref="out_file" >
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
9 <move type="directory" relativize_symlinks="True">
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
10 <src>${database_folder}</src>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">CAT/${database_folder}</target>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
12 </move>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/CAT/${database_folder}</value_translation>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
14 <value_translation type="function">abspath</value_translation>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
15 </column>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
16 <column name="taxonomy_folder" output_ref="out_file" >
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
17 <move type="directory" relativize_symlinks="True">
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
18 <src>${taxonomy_folder}</src>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
19 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">CAT/${taxonomy_folder}</target>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
20 </move>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
21 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/CAT/${taxonomy_folder}</value_translation>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
22 <value_translation type="function">abspath</value_translation>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
23 </column>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
24 </output>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
25 </data_table>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
26 </data_manager>
cffd8e2382cf "planemo upload commit 4e5a8d7629d90c41219b48b648dd4ab675b84af0"
iuc
parents:
diff changeset
27 </data_managers>