Mercurial > repos > iuc > data_manager_cat

comparison data_manager/data_manager_cat.py @ 1:74af283d8ebd draft

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"planemo upload commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:47:10 +0000
parents cffd8e2382cf
children
comparison
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0:cffd8e2382cf 1:74af283d8ebd
87 os.makedirs(args.install_path) 87 os.makedirs(args.install_path)
88 if args.db_url: 88 if args.db_url:
89 url_download(args.db_url, args.install_path) 89 url_download(args.db_url, args.install_path)
90 else: 90 else:
91 cat_prepare(args.install_path) 91 cat_prepare(args.install_path)
92 for root, dirs, files in os.walk(args.install_path): 92 for root, dirs, _ in os.walk(args.install_path):
93 for dname in dirs: 93 for dname in dirs:
94 if dname.endswith('CAT_database'): 94 if dname.endswith('CAT_database'):
95 cat_db = dname 95 cat_db = dname
96 elif dname.endswith('taxonomy'): 96 elif dname.endswith('taxonomy'):
97 tax_db = dname 97 tax_db = dname
107 data_table_entry = dict(value=cat_dir, name=cat_dir, 107 data_table_entry = dict(value=cat_dir, name=cat_dir,
108 database_folder=os.path.join(cat_dir, cat_db), 108 database_folder=os.path.join(cat_dir, cat_db),
109 taxonomy_folder=os.path.join(cat_dir, tax_db)) 109 taxonomy_folder=os.path.join(cat_dir, tax_db))
110 dm_dict['data_tables'][data_table].append(data_table_entry) 110 dm_dict['data_tables'][data_table].append(data_table_entry)
111 # save info to json file 111 # save info to json file
112 open(args.config_file, 'w').write(json.dumps(dm_dict)) 112 with open(args.config_file, 'w') as fh:
113 json.dump(dm_dict, fh, sort_keys=True)
113 114
114 115
115 if __name__ == "__main__": 116 if __name__ == "__main__":
116 main() 117 main()