Mercurial > repos > iuc > data_manager_dada2

diff data_manager/data_manager.py @ 3:c29275496061 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
author iuc
date Tue, 14 Jul 2020 07:37:09 -0400
parents a6a81f921701
children 38ccd4589990
line wrap: on
line diff
--- a/data_manager/data_manager.py	Sun Mar 29 17:51:21 2020 -0400
+++ b/data_manager/data_manager.py	Tue Jul 14 07:37:09 2020 -0400
@@ -105,7 +105,7 @@
 
     workdir = params['output_data'][0]['extra_files_path']
     os.mkdir(workdir)
-    url_download( FILE2TAXURL[dataset], dataset + ".taxonomy", workdir)
+    url_download(FILE2TAXURL[dataset], dataset + ".taxonomy", workdir)
 
     data_manager_json = {"data_tables": {}}
     data_manager_entry = {}
@@ -115,8 +115,8 @@
     data_manager_entry['taxlevels'] = FILE2TAXLEVELS.get(dataset, DEFAULT_TAXLEVELS)
     data_manager_json["data_tables"]["dada2_taxonomy"] = data_manager_entry
 
-    if FILE2SPECIESURL.get(dataset, False ):
-        url_download( FILE2SPECIESURL[dataset], dataset + ".species", workdir)
+    if FILE2SPECIESURL.get(dataset, False):
+        url_download(FILE2SPECIESURL[dataset], dataset + ".species", workdir)
         data_manager_entry = {}
         data_manager_entry['value'] = dataset
         data_manager_entry['name'] = FILE2NAME[dataset]