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view data_manager_conf.xml @ 6:5711fc06a63e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 27be397d903081b2e7848e568c587917e4f49b89
author iuc
date Tue, 27 Jun 2023 17:26:40 +0000
parents f57c13f5878b
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/dada2_fetcher.xml" id="dada2_fetcher">
        <data_table name="dada2_taxonomy">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="out_file">
                    <move type="file" relativize_symlinks="True">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">dada2/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/dada2/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
                <column name="taxlevels" />
            </output>
        </data_table>
        <data_table name="dada2_species">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="out_file">
                    <move type="file" relativize_symlinks="True">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">dada2/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/dada2/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>