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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dram_database_downloader commit 08664fb0e31a61514b787021d54ee5464be6043d
author iuc
date Tue, 13 Sep 2022 09:08:55 +0000
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0:bd342a6a5b0f 1:40c8fc0a2bb0
1 If Galaxy is configured such that outputs are written to the job working dir
2 the admin needs to perform one manual step to make the databases useable.
3 This is because DRAM creates a configuration file during installation, but the
4 file is written before the Galaxy job finishes, so the database locations are
5 relative to the job working directory instead of the configured
6 GALAXY_DATA_MANAGER_DATA_PATH.
7
8 It may be more ideal to perform this task as a second step in the data manager
9 tool, but DRAM will not allow the configuration file to be updated to point to
10 locations unless the databases exist in those locations. But the data manager
11 tool moves the databases to these locations as its last step, making it
12 impossible to update the DRAM configuration file as a second step of that tool.
13
14 See
15 https://github.com/WrightonLabCSU/DRAM/wiki/5.-Managing%2C-updating-or-moving-a-DRAM-installation-and-databases
16 for details.